PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr011071.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 509aa    MW: 57069.3 Da    PI: 6.0484
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr011071.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS355.57.9e-1091465021374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                  l++lL+ecA a+s ++l +a+++L +l ++asp+g +  +R++ayf +A+a+r+++s+ + ++ l          +++ +a+++f+ +sP++kf+h+t
  Pbr011071.1 146 LITLLFECAVAISVDNLPEAHRMLLELTHMASPYGpSCAERVVAYFSKAMASRVVNSWLGNCSPLVN-------YKSVHSAFQVFNTISPFVKFAHFT 236
                  5789*******************************9999*****************77776655443.......34456899**************** PP

         GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                   NqaIlea+++ +rvHi+D+di+qGlQWpaL++ La+R egpp+lR+Tgvg     s+e l etg++L++fA++lg++fef + +++++ +++ ++ +
  Pbr011071.1 237 SNQAILEAFHHRDRVHILDLDIMQGLQWPALFHILATRMEGPPHLRMTGVGT----SSEILLETGKQLSNFAKRLGLSFEFFP-IVRTVGEVDASMVQ 329
                  ****************************************************....99*************************.7************* PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  v++gE+laV++    h+l+d ++s  +    +L+l+ +l P++v++veq+++h s+sFl+rf+ +l+yys++fdsle+ lp+++  r+kvE+ ++ re
  Pbr011071.1 330 VEQGETLAVHWLQ--HSLYDATGSDWK----TLRLIEELAPRIVTLVEQDMSH-SGSFLDRFVGSLHYYSTMFDSLESYLPSDNPSRHKVEHGMFYRE 420
                  ************9..999999999999....**********************.899***************************************** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  i n++a  g +r  +  ++++Wr+ l++ + F +v++s + ++qa+l+l++++  +gy++ + +g++ lgWkd +L+++SaW+
  Pbr011071.1 421 INNILAIGGPARSGED-KFRQWRSELGArSEFMQVEMSGNSMAQAQLILNMFPpTHGYSLVQGDGTIGLGWKDTSLYVASAWT 502
                  ***********77665.5********8659****************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.564120481IPR005202Transcription factor GRAS
PfamPF035142.7E-106146502IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MAHGTVNIIQ SHESWINYPN SNVTGFENNP ISNPKPVENR FINLERSELS QWVEHITKQL  60
IDDLPEPATT NTASADMLQT SEDYFVPSSL SADLISPTKV PRRSYGEHEH HELQWGNELQ  120
LHADNNDVRA RGGNNMSKLD EHGLTLITLL FECAVAISVD NLPEAHRMLL ELTHMASPYG  180
PSCAERVVAY FSKAMASRVV NSWLGNCSPL VNYKSVHSAF QVFNTISPFV KFAHFTSNQA  240
ILEAFHHRDR VHILDLDIMQ GLQWPALFHI LATRMEGPPH LRMTGVGTSS EILLETGKQL  300
SNFAKRLGLS FEFFPIVRTV GEVDASMVQV EQGETLAVHW LQHSLYDATG SDWKTLRLIE  360
ELAPRIVTLV EQDMSHSGSF LDRFVGSLHY YSTMFDSLES YLPSDNPSRH KVEHGMFYRE  420
INNILAIGGP ARSGEDKFRQ WRSELGARSE FMQVEMSGNS MAQAQLILNM FPPTHGYSLV  480
QGDGTIGLGW KDTSLYVASA WTCSHASR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-491505018374GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009369454.10.0PREDICTED: protein SCARECROW-like
SwissprotQ2Z2E91e-139SCR_IPONI; Protein SCARECROW
TrEMBLM5VYE30.0M5VYE3_PRUPE; Uncharacterized protein (Fragment)
STRINGPOPTR_0002s03740.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117873138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-140GRAS family protein